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I am not an hacking expert but my comments are...
If you do that via a automatic program over network, then Java's networking libraries are enough to to that in high protocol levels. I mean fi you find a bug in FTP protocol, you can use it with Java. But for lower level, you need to develop a JNI interface to low level networking details.
If you are doing it on the host computer (e.g. using a console), then i think you should find the bugs inside the system software on that system and try to exploit it.. And as far as i know, there is nothing related to Java here unless that system software is written in Java.
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