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i have 2 ArrayLists, one containing all the reactants and other containing all products. There is a third arraylist containing the catalysts which carry out reactions. i need to show the biological network in terms of nodes and edges. how to do that?
Cytoscape, or for a more lower level API something like JUNG. If you are asking how to do this without 3rd party libraries, then the question is quite possibly too general - I recommend you read the following http://www.catb.org/~esr/faqs/smart-questions.html