THanks for the replies guys!
So i just jar the file and even though it can't run when i click on it - that's okay? I assume i still have to tie the keyStore to the jar right?
So if i understand it correctly - this is what my html file would look like:
param name="code" value="com.mydomain.MyClass.class"
<body>
<applet
param name = "code"
value = "WebStatConverter.class" (if i just wanna run it in a browser on the local machine)
or
value = "ww.myURL.com.WebStatConverter.class" (if i wanna run it from the root of my folder on the webserver)
width="500"
height="500">
</applet>
</body>